4 Best, Genuine Boutique Hotels in Flagstaff in 2026

Any place that lists stargazing as one of its main activities is good in our books, making this Flagstaff AZ boutique hotel, on the western outskirts of town, an instant favorite. Besides the night sky, High Country Motor Lodge is a clever, contemporary take on the roadside motel. Unlike many others, it is not a renovation job, giving you this decade’s best in facilities and accommodation. We’re talking stylish, tiny-home-style cottages, matching motel buildings, and a gorgeous courtyard pool. It’s one of the lesser of all charming roadsides, essentially a… > Read Our Full Review

This Motor Hotel sits right outside Downtown Flagstaff just off of Route 66. Once you get used to the idea that everything in Flagstaff can in some ways be related to Route 66, the highway loses a bit of its romance, but this has no effect on either the city or the hotels. Indeed, the Americana Motor Hotel does a superb job maintaining the retro roadside mythology, polishing it off to an almost plastic-y sheen. The exterior is a burst of color, the interiors full retro, but not in a… > Read Our Full Review

The northwestern edge of Downtown Flagstaff is a quiet residential area with a small, intimate, boutique B&B tucked among the winding streets. It’s one of the more homey options in Flagstaff, very much a collection of all your rich, enthusiastic yet slightly eccentric aunts’ guest rooms. The house is not notably historic, though it is a lovely piece of property. It was opened by a couple with a history in hospitality, who moved to Flagstaff to continue living their dream. And the house shows the love. Between the friendly service,… > Read Our Full Review

While many Flagstaff boutique hotels sit casually on the side of Route 66, this historical, boutique B&B sits snug within walking distance of the city’s small but mighty center. The building has been fully renovated since its construction in 1894 by a regional company with a family of southwestern hotels. New trappings on a 125-year-old frame make for a lovely combination of antique charm and modern luxury. The house blends harmoniously into the rest of the neighborhood, charming and residential. Top of the line in comfort and location, Bespoke Inn,… > Read Our Full Review